RYim's Tidbits
AboutCategories

Categories

Bash

Error catching in scripts and pipes

(QuickTip) Navigating large file trees (1)

(QuickTip) Automatic installation of the latest HTSlib

Creating launchers which pass all arguments to the target software

Basics

Perl cheatsheet

Getting to grips with R functions

R cheatsheet

Loading multiple files into a single df and subsetting them

Biopython cheatsheet

Python cheatsheet

(QuickTip) Functions and scoping in Python

Rocket Introduction

Wrapper scripts - Running your jobs on clusters efficiently

(QuickTip) Navigating large file trees (1)

Random sampling of a dataset into training and test datasets

(QuickTip) When Perl can't find the modules that you just installed

(QuickTip) Writing data frames or lists of data frames to files elegantly

Creating launchers which pass all arguments to the target software

R

Using sequence data in dataframes with BioStrings

Plotting time series in R

Using R to get info from websites using APIs

Getting to grips with R functions

R cheatsheet

Loading multiple files into a single df and subsetting them

(QuickTip) Extracting SAM-formatted tags from data in R

Clustering in R with a custom distance function

Random sampling of a dataset into training and test datasets

(QuickTip) Writing data frames or lists of data frames to files elegantly

QuickTip

Using sequence data in dataframes with BioStrings

How to move data from Rocket to AWS

Error catching in scripts and pipes

(QuickTip) Functions and scoping in Python

(QuickTip) Navigating large file trees (1)

(QuickTip) Extracting SAM-formatted tags from data in R

(QuickTip) Automatic installation of the latest HTSlib

(QuickTip) When Perl can't find the modules that you just installed

(QuickTip) Writing data frames or lists of data frames to files elegantly

Tibanna

Installing Snakemake and Tibanna using AWS Image Builder

Snakemake

Installing Snakemake and Tibanna using AWS Image Builder

AWS

How to move data from Rocket to AWS

Using bucket policies to restrict access to an S3 bucket

(QuickTip) Automatic installation of the latest HTSlib

Installing Snakemake and Tibanna using AWS Image Builder

Perl

Perl cheatsheet

(QuickTip) When Perl can't find the modules that you just installed

Statistics

Random sampling of a dataset into training and test datasets

MachineLearning

Random sampling of a dataset into training and test datasets

NewcastleUniversity

How to move data from Rocket to AWS

How to access Newcastle University email from external email clients

Phylogenetics

Clustering in R with a custom distance function

Biostatistics

Clustering in R with a custom distance function

Bioinformatics

Using R to get info from websites using APIs

Biopython cheatsheet

Rocket Introduction

Wrapper scripts - Running your jobs on clusters efficiently

Bioinformatics commands store

HighPerformanceComputing

Rocket Introduction

Wrapper scripts - Running your jobs on clusters efficiently

Python

Biopython cheatsheet

Python cheatsheet

(QuickTip) Functions and scoping in Python

Cheatsheet

Perl cheatsheet

R cheatsheet

Biopython cheatsheet

Python cheatsheet

BioConductor

Using sequence data in dataframes with BioStrings

Subscribe

  • RYim

A bioinformatics/computational biology blog for tips and teaching resources. It is written for my students and my own reference, but is for use by all.